Left reads: Input : 309448 Mapped : 259680 (83.9% of input) of these: 10112 ( 3.9%) have multiple alignments (988 have >20) Right reads: Input : 309448 Mapped : 247594 (80.0% of input) of these: 9671 ( 3.9%) have multiple alignments (988 have >20) 82.0% overall read mapping rate. Aligned pairs: 217962 of these: 8516 ( 3.9%) have multiple alignments 5411 ( 2.5%) are discordant alignments 68.7% concordant pair alignment rate.