Left reads: Input : 519113 Mapped : 459097 (88.4% of input) of these: 13443 ( 2.9%) have multiple alignments (566 have >20) Right reads: Input : 519113 Mapped : 438374 (84.4% of input) of these: 13094 ( 3.0%) have multiple alignments (566 have >20) 86.4% overall read mapping rate. Aligned pairs: 401156 of these: 11687 ( 2.9%) have multiple alignments 6680 ( 1.7%) are discordant alignments 76.0% concordant pair alignment rate.