Left reads: Input : 344127 Mapped : 301739 (87.7% of input) of these: 27038 ( 9.0%) have multiple alignments (3249 have >20) Right reads: Input : 344127 Mapped : 290318 (84.4% of input) of these: 26373 ( 9.1%) have multiple alignments (3249 have >20) 86.0% overall read mapping rate. Aligned pairs: 263879 of these: 23998 ( 9.1%) have multiple alignments 5619 ( 2.1%) are discordant alignments 75.0% concordant pair alignment rate.