Left reads: Input : 374669 Mapped : 314772 (84.0% of input) of these: 10611 ( 3.4%) have multiple alignments (114 have >20) Right reads: Input : 374669 Mapped : 296428 (79.1% of input) of these: 10103 ( 3.4%) have multiple alignments (114 have >20) 81.6% overall read mapping rate. Aligned pairs: 261224 of these: 8912 ( 3.4%) have multiple alignments 6030 ( 2.3%) are discordant alignments 68.1% concordant pair alignment rate.