Left reads: Input : 424222 Mapped : 377014 (88.9% of input) of these: 12545 ( 3.3%) have multiple alignments (1249 have >20) Right reads: Input : 424222 Mapped : 361363 (85.2% of input) of these: 12116 ( 3.4%) have multiple alignments (1249 have >20) 87.0% overall read mapping rate. Aligned pairs: 334562 of these: 10905 ( 3.3%) have multiple alignments 5794 ( 1.7%) are discordant alignments 77.5% concordant pair alignment rate.