Left reads: Input : 449713 Mapped : 386328 (85.9% of input) of these: 35013 ( 9.1%) have multiple alignments (1520 have >20) Right reads: Input : 449713 Mapped : 357285 (79.4% of input) of these: 33258 ( 9.3%) have multiple alignments (1520 have >20) 82.7% overall read mapping rate. Aligned pairs: 319167 of these: 29804 ( 9.3%) have multiple alignments 10234 ( 3.2%) are discordant alignments 68.7% concordant pair alignment rate.