Left reads: Input : 281357 Mapped : 226624 (80.5% of input) of these: 9386 ( 4.1%) have multiple alignments (1138 have >20) Right reads: Input : 281357 Mapped : 228683 (81.3% of input) of these: 9490 ( 4.1%) have multiple alignments (1138 have >20) 80.9% overall read mapping rate. Aligned pairs: 194146 of these: 8096 ( 4.2%) have multiple alignments 3987 ( 2.1%) are discordant alignments 67.6% concordant pair alignment rate.