Left reads: Input : 312393 Mapped : 262776 (84.1% of input) of these: 16001 ( 6.1%) have multiple alignments (4033 have >20) Right reads: Input : 312393 Mapped : 262892 (84.2% of input) of these: 16044 ( 6.1%) have multiple alignments (4033 have >20) 84.1% overall read mapping rate. Aligned pairs: 232401 of these: 14088 ( 6.1%) have multiple alignments 4176 ( 1.8%) are discordant alignments 73.1% concordant pair alignment rate.