Left reads: Input : 914116 Mapped : 745540 (81.6% of input) of these: 176442 (23.7%) have multiple alignments (16765 have >20) Right reads: Input : 914116 Mapped : 722936 (79.1% of input) of these: 171893 (23.8%) have multiple alignments (16765 have >20) 80.3% overall read mapping rate. Aligned pairs: 639356 of these: 155881 (24.4%) have multiple alignments 15146 ( 2.4%) are discordant alignments 68.3% concordant pair alignment rate.