Left reads: Input : 820757 Mapped : 674601 (82.2% of input) of these: 25975 ( 3.9%) have multiple alignments (3671 have >20) Right reads: Input : 820757 Mapped : 660455 (80.5% of input) of these: 25570 ( 3.9%) have multiple alignments (3671 have >20) 81.3% overall read mapping rate. Aligned pairs: 602171 of these: 23605 ( 3.9%) have multiple alignments 7861 ( 1.3%) are discordant alignments 72.4% concordant pair alignment rate.