Left reads: Input : 2935163 Mapped : 2616960 (89.2% of input) of these: 671334 (25.7%) have multiple alignments (129579 have >20) Right reads: Input : 2935163 Mapped : 2563043 (87.3% of input) of these: 661230 (25.8%) have multiple alignments (129583 have >20) 88.2% overall read mapping rate. Aligned pairs: 2348532 of these: 608796 (25.9%) have multiple alignments 44581 ( 1.9%) are discordant alignments 78.5% concordant pair alignment rate.