Left reads: Input : 393301 Mapped : 333380 (84.8% of input) of these: 11359 ( 3.4%) have multiple alignments (1281 have >20) Right reads: Input : 393301 Mapped : 315099 (80.1% of input) of these: 10731 ( 3.4%) have multiple alignments (1281 have >20) 82.4% overall read mapping rate. Aligned pairs: 280017 of these: 9576 ( 3.4%) have multiple alignments 6618 ( 2.4%) are discordant alignments 69.5% concordant pair alignment rate.