Left reads: Input : 654091 Mapped : 566877 (86.7% of input) of these: 36524 ( 6.4%) have multiple alignments (3798 have >20) Right reads: Input : 654091 Mapped : 555195 (84.9% of input) of these: 36161 ( 6.5%) have multiple alignments (3798 have >20) 85.8% overall read mapping rate. Aligned pairs: 498712 of these: 32316 ( 6.5%) have multiple alignments 7039 ( 1.4%) are discordant alignments 75.2% concordant pair alignment rate.