Left reads: Input : 1085015 Mapped : 943480 (87.0% of input) of these: 33377 ( 3.5%) have multiple alignments (2968 have >20) Right reads: Input : 1085015 Mapped : 894718 (82.5% of input) of these: 32163 ( 3.6%) have multiple alignments (2969 have >20) 84.7% overall read mapping rate. Aligned pairs: 816668 of these: 29884 ( 3.7%) have multiple alignments 14015 ( 1.7%) are discordant alignments 74.0% concordant pair alignment rate.