Left reads: Input : 666636 Mapped : 545439 (81.8% of input) of these: 17603 ( 3.2%) have multiple alignments (2359 have >20) Right reads: Input : 666636 Mapped : 538988 (80.9% of input) of these: 17436 ( 3.2%) have multiple alignments (2361 have >20) 81.3% overall read mapping rate. Aligned pairs: 495016 of these: 16000 ( 3.2%) have multiple alignments 5254 ( 1.1%) are discordant alignments 73.5% concordant pair alignment rate.