Left reads: Input : 589482 Mapped : 524560 (89.0% of input) of these: 30537 ( 5.8%) have multiple alignments (5498 have >20) Right reads: Input : 589482 Mapped : 503744 (85.5% of input) of these: 29786 ( 5.9%) have multiple alignments (5498 have >20) 87.2% overall read mapping rate. Aligned pairs: 460023 of these: 26851 ( 5.8%) have multiple alignments 8127 ( 1.8%) are discordant alignments 76.7% concordant pair alignment rate.