Left reads: Input : 1139396 Mapped : 1020140 (89.5% of input) of these: 120474 (11.8%) have multiple alignments (13137 have >20) Right reads: Input : 1139396 Mapped : 976064 (85.7% of input) of these: 116999 (12.0%) have multiple alignments (13137 have >20) 87.6% overall read mapping rate. Aligned pairs: 899319 of these: 109074 (12.1%) have multiple alignments 16453 ( 1.8%) are discordant alignments 77.5% concordant pair alignment rate.