Left reads: Input : 234539 Mapped : 196057 (83.6% of input) of these: 7474 ( 3.8%) have multiple alignments (151 have >20) Right reads: Input : 234539 Mapped : 185450 (79.1% of input) of these: 7154 ( 3.9%) have multiple alignments (151 have >20) 81.3% overall read mapping rate. Aligned pairs: 163214 of these: 6342 ( 3.9%) have multiple alignments 3039 ( 1.9%) are discordant alignments 68.3% concordant pair alignment rate.