Left reads: Input : 620931 Mapped : 509817 (82.1% of input) of these: 15803 ( 3.1%) have multiple alignments (1596 have >20) Right reads: Input : 620931 Mapped : 502619 (80.9% of input) of these: 15670 ( 3.1%) have multiple alignments (1596 have >20) 81.5% overall read mapping rate. Aligned pairs: 460635 of these: 14502 ( 3.1%) have multiple alignments 5192 ( 1.1%) are discordant alignments 73.3% concordant pair alignment rate.