Left reads: Input : 1356617 Mapped : 1217640 (89.8% of input) of these: 145652 (12.0%) have multiple alignments (28089 have >20) Right reads: Input : 1356617 Mapped : 1151699 (84.9% of input) of these: 141520 (12.3%) have multiple alignments (28089 have >20) 87.3% overall read mapping rate. Aligned pairs: 1061939 of these: 129674 (12.2%) have multiple alignments 24896 ( 2.3%) are discordant alignments 76.4% concordant pair alignment rate.