Left reads: Input : 712248 Mapped : 601963 (84.5% of input) of these: 49416 ( 8.2%) have multiple alignments (8271 have >20) Right reads: Input : 712248 Mapped : 604286 (84.8% of input) of these: 49604 ( 8.2%) have multiple alignments (8271 have >20) 84.7% overall read mapping rate. Aligned pairs: 536132 of these: 44591 ( 8.3%) have multiple alignments 12718 ( 2.4%) are discordant alignments 73.5% concordant pair alignment rate.