Left reads: Input : 1169829 Mapped : 1054904 (90.2% of input) of these: 113079 (10.7%) have multiple alignments (14475 have >20) Right reads: Input : 1169829 Mapped : 1008926 (86.2% of input) of these: 110048 (10.9%) have multiple alignments (14475 have >20) 88.2% overall read mapping rate. Aligned pairs: 931125 of these: 102693 (11.0%) have multiple alignments 19376 ( 2.1%) are discordant alignments 77.9% concordant pair alignment rate.