Left reads: Input : 3315474 Mapped : 2867675 (86.5% of input) of these: 89020 ( 3.1%) have multiple alignments (7565 have >20) Right reads: Input : 3315474 Mapped : 2819183 (85.0% of input) of these: 88017 ( 3.1%) have multiple alignments (7565 have >20) 85.8% overall read mapping rate. Aligned pairs: 2605020 of these: 82016 ( 3.1%) have multiple alignments 46545 ( 1.8%) are discordant alignments 77.2% concordant pair alignment rate.