Left reads: Input : 1444650 Mapped : 1310050 (90.7% of input) of these: 115104 ( 8.8%) have multiple alignments (8523 have >20) Right reads: Input : 1444650 Mapped : 1231018 (85.2% of input) of these: 110664 ( 9.0%) have multiple alignments (8523 have >20) 87.9% overall read mapping rate. Aligned pairs: 1142322 of these: 103872 ( 9.1%) have multiple alignments 24103 ( 2.1%) are discordant alignments 77.4% concordant pair alignment rate.