Left reads: Input : 999120 Mapped : 895597 (89.6% of input) of these: 91269 (10.2%) have multiple alignments (14216 have >20) Right reads: Input : 999120 Mapped : 865538 (86.6% of input) of these: 89318 (10.3%) have multiple alignments (14216 have >20) 88.1% overall read mapping rate. Aligned pairs: 801276 of these: 82405 (10.3%) have multiple alignments 16302 ( 2.0%) are discordant alignments 78.6% concordant pair alignment rate.