Left reads: Input : 543967 Mapped : 475044 (87.3% of input) of these: 26262 ( 5.5%) have multiple alignments (3967 have >20) Right reads: Input : 543967 Mapped : 460936 (84.7% of input) of these: 25742 ( 5.6%) have multiple alignments (3967 have >20) 86.0% overall read mapping rate. Aligned pairs: 422327 of these: 23776 ( 5.6%) have multiple alignments 8941 ( 2.1%) are discordant alignments 76.0% concordant pair alignment rate.