Left reads: Input : 1523262 Mapped : 1381880 (90.7% of input) of these: 97045 ( 7.0%) have multiple alignments (3965 have >20) Right reads: Input : 1523262 Mapped : 1316571 (86.4% of input) of these: 94040 ( 7.1%) have multiple alignments (3965 have >20) 88.6% overall read mapping rate. Aligned pairs: 1223677 of these: 88589 ( 7.2%) have multiple alignments 20485 ( 1.7%) are discordant alignments 79.0% concordant pair alignment rate.