Left reads: Input : 1239205 Mapped : 1104039 (89.1% of input) of these: 248101 (22.5%) have multiple alignments (46356 have >20) Right reads: Input : 1239205 Mapped : 1058933 (85.5% of input) of these: 241817 (22.8%) have multiple alignments (46356 have >20) 87.3% overall read mapping rate. Aligned pairs: 966129 of these: 222312 (23.0%) have multiple alignments 28505 ( 3.0%) are discordant alignments 75.7% concordant pair alignment rate.