Left reads: Input : 3380227 Mapped : 2954123 (87.4% of input) of these: 1124155 (38.1%) have multiple alignments (295062 have >20) Right reads: Input : 3380227 Mapped : 2904592 (85.9% of input) of these: 1111272 (38.3%) have multiple alignments (295071 have >20) 86.7% overall read mapping rate. Aligned pairs: 2616953 of these: 999693 (38.2%) have multiple alignments 95377 ( 3.6%) are discordant alignments 74.6% concordant pair alignment rate.