segment_juncs v2.1.1 (ecf7617)
---------------------------
[samopen] SAM header is present: 114 sequences.
Loading reference sequences...
	Loading chr10... done (129993255 bases).
	Loading chr11... done (121843856 bases).
	Loading chr12... done (121257530 bases).
	Loading chr13... done (120284312 bases).
	Loading chr14... done (125194864 bases).
	Loading chr15... done (103494974 bases).
	Loading chr16... done (98319150 bases).
	Loading chr17... done (95272651 bases).
	Loading chr18... done (90772031 bases).
	Loading chr19... done (61342430 bases).
	Loading chr1... done (197195432 bases).
	Loading chr2... done (181748087 bases).
	Loading chr3... done (159599783 bases).
	Loading chr4... done (155630120 bases).
	Loading chr5... done (152537259 bases).
	Loading chr6... done (149517037 bases).
	Loading chr7... done (152524553 bases).
	Loading chr8... done (131738871 bases).
	Loading chr9... done (124076172 bases).
	Loading chrM... done (16299 bases).
	Loading chrX... done (166650296 bases).
	Loading chrY... done (15902555 bases).
	Loading ERCC-00002... done (1061 bases).
	Loading ERCC-00003... done (1023 bases).
	Loading ERCC-00004... done (523 bases).
	Loading ERCC-00009... done (984 bases).
	Loading ERCC-00012... done (994 bases).
	Loading ERCC-00013... done (808 bases).
	Loading ERCC-00014... done (1957 bases).
	Loading ERCC-00016... done (844 bases).
	Loading ERCC-00017... done (1136 bases).
	Loading ERCC-00019... done (644 bases).
	Loading ERCC-00022... done (751 bases).
	Loading ERCC-00024... done (536 bases).
	Loading ERCC-00025... done (1994 bases).
	Loading ERCC-00028... done (1130 bases).
	Loading ERCC-00031... done (1138 bases).
	Loading ERCC-00033... done (2022 bases).
	Loading ERCC-00034... done (1019 bases).
	Loading ERCC-00035... done (1130 bases).
	Loading ERCC-00039... done (740 bases).
	Loading ERCC-00040... done (744 bases).
	Loading ERCC-00041... done (1122 bases).
	Loading ERCC-00042... done (1023 bases).
	Loading ERCC-00043... done (1023 bases).
	Loading ERCC-00044... done (1156 bases).
	Loading ERCC-00046... done (522 bases).
	Loading ERCC-00048... done (992 bases).
	Loading ERCC-00051... done (274 bases).
	Loading ERCC-00053... done (1023 bases).
	Loading ERCC-00054... done (274 bases).
	Loading ERCC-00057... done (1021 bases).
	Loading ERCC-00058... done (1136 bases).
	Loading ERCC-00059... done (525 bases).
	Loading ERCC-00060... done (523 bases).
	Loading ERCC-00061... done (1136 bases).
	Loading ERCC-00062... done (1023 bases).
	Loading ERCC-00067... done (644 bases).
	Loading ERCC-00069... done (1137 bases).
	Loading ERCC-00071... done (642 bases).
	Loading ERCC-00073... done (603 bases).
	Loading ERCC-00074... done (522 bases).
	Loading ERCC-00075... done (1023 bases).
	Loading ERCC-00076... done (642 bases).
	Loading ERCC-00077... done (273 bases).
	Loading ERCC-00078... done (993 bases).
	Loading ERCC-00079... done (644 bases).
	Loading ERCC-00081... done (534 bases).
	Loading ERCC-00083... done (1022 bases).
	Loading ERCC-00084... done (994 bases).
	Loading ERCC-00085... done (844 bases).
	Loading ERCC-00086... done (1020 bases).
	Loading ERCC-00092... done (1124 bases).
	Loading ERCC-00095... done (521 bases).
	Loading ERCC-00096... done (1107 bases).
	Loading ERCC-00097... done (523 bases).
	Loading ERCC-00098... done (1143 bases).
	Loading ERCC-00099... done (1350 bases).
	Loading ERCC-00104... done (2022 bases).
	Loading ERCC-00108... done (1022 bases).
	Loading ERCC-00109... done (536 bases).
	Loading ERCC-00111... done (994 bases).
	Loading ERCC-00112... done (1136 bases).
	Loading ERCC-00113... done (840 bases).
	Loading ERCC-00116... done (1991 bases).
	Loading ERCC-00117... done (1136 bases).
	Loading ERCC-00120... done (536 bases).
	Loading ERCC-00123... done (1022 bases).
	Loading ERCC-00126... done (1118 bases).
	Loading ERCC-00130... done (1059 bases).
	Loading ERCC-00131... done (771 bases).
	Loading ERCC-00134... done (274 bases).
	Loading ERCC-00136... done (1033 bases).
	Loading ERCC-00137... done (537 bases).
	Loading ERCC-00138... done (1024 bases).
	Loading ERCC-00142... done (493 bases).
	Loading ERCC-00143... done (784 bases).
	Loading ERCC-00144... done (538 bases).
	Loading ERCC-00145... done (1042 bases).
	Loading ERCC-00147... done (1023 bases).
	Loading ERCC-00148... done (494 bases).
	Loading ERCC-00150... done (743 bases).
	Loading ERCC-00154... done (537 bases).
	Loading ERCC-00156... done (494 bases).
	Loading ERCC-00157... done (1019 bases).
	Loading ERCC-00158... done (1027 bases).
	Loading ERCC-00160... done (743 bases).
	Loading ERCC-00162... done (523 bases).
	Loading ERCC-00163... done (543 bases).
	Loading ERCC-00164... done (1022 bases).
	Loading ERCC-00165... done (872 bases).
	Loading ERCC-00168... done (1024 bases).
	Loading ERCC-00170... done (1023 bases).
	Loading ERCC-00171... done (505 bases).
>> Performing segment-search:
Loading left segment hits... done.
Loading right segment hits...done.
	found 14964 potential split-segment junctions
	found 908 potential small deletions
	found 1843 potential small insertions
Reported 14964 total potential splices
Reporting 908 potential deletions...
Reporting 1843 potential insertions...
Reporting potential fusions...