Left reads: Input : 1328533 Mapped : 1125980 (84.8% of input) of these: 84634 ( 7.5%) have multiple alignments (8503 have >20) Right reads: Input : 1328533 Mapped : 1092735 (82.3% of input) of these: 83159 ( 7.6%) have multiple alignments (8503 have >20) 83.5% overall read mapping rate. Aligned pairs: 990886 of these: 76266 ( 7.7%) have multiple alignments 22330 ( 2.3%) are discordant alignments 72.9% concordant pair alignment rate.