Left reads: Input : 1289328 Mapped : 1100161 (85.3% of input) of these: 82025 ( 7.5%) have multiple alignments (14356 have >20) Right reads: Input : 1289328 Mapped : 1090339 (84.6% of input) of these: 82074 ( 7.5%) have multiple alignments (14357 have >20) 84.9% overall read mapping rate. Aligned pairs: 964720 of these: 73131 ( 7.6%) have multiple alignments 25977 ( 2.7%) are discordant alignments 72.8% concordant pair alignment rate.