Left reads: Input : 3211478 Mapped : 2898830 (90.3% of input) of these: 456547 (15.7%) have multiple alignments (81289 have >20) Right reads: Input : 3211478 Mapped : 2826835 (88.0% of input) of these: 449836 (15.9%) have multiple alignments (81083 have >20) 89.1% overall read mapping rate. Aligned pairs: 2623820 of these: 418488 (15.9%) have multiple alignments 46205 ( 1.8%) are discordant alignments 80.3% concordant pair alignment rate.