Left reads: Input : 1168257 Mapped : 987716 (84.5% of input) of these: 125244 (12.7%) have multiple alignments (15048 have >20) Right reads: Input : 1168257 Mapped : 965736 (82.7% of input) of these: 124035 (12.8%) have multiple alignments (15048 have >20) 83.6% overall read mapping rate. Aligned pairs: 874303 of these: 112767 (12.9%) have multiple alignments 16740 ( 1.9%) are discordant alignments 73.4% concordant pair alignment rate.