Left reads: Input : 214877 Mapped : 179107 (83.4% of input) of these: 6033 ( 3.4%) have multiple alignments (558 have >20) Right reads: Input : 214877 Mapped : 167889 (78.1% of input) of these: 5642 ( 3.4%) have multiple alignments (558 have >20) 80.7% overall read mapping rate. Aligned pairs: 148006 of these: 4921 ( 3.3%) have multiple alignments 3578 ( 2.4%) are discordant alignments 67.2% concordant pair alignment rate.