Left reads: Input : 361497 Mapped : 299268 (82.8% of input) of these: 9650 ( 3.2%) have multiple alignments (1248 have >20) Right reads: Input : 361497 Mapped : 292736 (81.0% of input) of these: 9279 ( 3.2%) have multiple alignments (1248 have >20) 81.9% overall read mapping rate. Aligned pairs: 255476 of these: 8142 ( 3.2%) have multiple alignments 5504 ( 2.2%) are discordant alignments 69.1% concordant pair alignment rate.