Left reads: Input : 279902 Mapped : 228977 (81.8% of input) of these: 9170 ( 4.0%) have multiple alignments (1005 have >20) Right reads: Input : 279902 Mapped : 232313 (83.0% of input) of these: 9221 ( 4.0%) have multiple alignments (1005 have >20) 82.4% overall read mapping rate. Aligned pairs: 200227 of these: 7991 ( 4.0%) have multiple alignments 4718 ( 2.4%) are discordant alignments 69.8% concordant pair alignment rate.