Left reads: Input : 993119 Mapped : 883678 (89.0% of input) of these: 81147 ( 9.2%) have multiple alignments (11115 have >20) Right reads: Input : 993119 Mapped : 857029 (86.3% of input) of these: 79796 ( 9.3%) have multiple alignments (11115 have >20) 87.6% overall read mapping rate. Aligned pairs: 786579 of these: 73904 ( 9.4%) have multiple alignments 15720 ( 2.0%) are discordant alignments 77.6% concordant pair alignment rate.