Left reads: Input : 1622119 Mapped : 1465333 (90.3% of input) of these: 113383 ( 7.7%) have multiple alignments (13835 have >20) Right reads: Input : 1622119 Mapped : 1411057 (87.0% of input) of these: 111651 ( 7.9%) have multiple alignments (13835 have >20) 88.7% overall read mapping rate. Aligned pairs: 1309322 of these: 103301 ( 7.9%) have multiple alignments 21850 ( 1.7%) are discordant alignments 79.4% concordant pair alignment rate.