Left reads: Input : 169006 Mapped : 135435 (80.1% of input) of these: 4435 ( 3.3%) have multiple alignments (327 have >20) Right reads: Input : 169006 Mapped : 128393 (76.0% of input) of these: 4184 ( 3.3%) have multiple alignments (327 have >20) 78.1% overall read mapping rate. Aligned pairs: 109440 of these: 3582 ( 3.3%) have multiple alignments 2434 ( 2.2%) are discordant alignments 63.3% concordant pair alignment rate.