Left reads: Input : 463454 Mapped : 373480 (80.6% of input) of these: 16279 ( 4.4%) have multiple alignments (475 have >20) Right reads: Input : 463454 Mapped : 384652 (83.0% of input) of these: 16611 ( 4.3%) have multiple alignments (475 have >20) 81.8% overall read mapping rate. Aligned pairs: 323430 of these: 14109 ( 4.4%) have multiple alignments 6649 ( 2.1%) are discordant alignments 68.4% concordant pair alignment rate.