Left reads: Input : 218606 Mapped : 169757 (77.7% of input) of these: 5430 ( 3.2%) have multiple alignments (392 have >20) Right reads: Input : 218606 Mapped : 141488 (64.7% of input) of these: 4460 ( 3.2%) have multiple alignments (392 have >20) 71.2% overall read mapping rate. Aligned pairs: 116513 of these: 3657 ( 3.1%) have multiple alignments 2221 ( 1.9%) are discordant alignments 52.3% concordant pair alignment rate.