Left reads: Input : 479176 Mapped : 371285 (77.5% of input) of these: 18346 ( 4.9%) have multiple alignments (2340 have >20) Right reads: Input : 479176 Mapped : 368897 (77.0% of input) of these: 18327 ( 5.0%) have multiple alignments (2340 have >20) 77.2% overall read mapping rate. Aligned pairs: 336039 of these: 16673 ( 5.0%) have multiple alignments 1420 ( 0.4%) are discordant alignments 69.8% concordant pair alignment rate.