Left reads: Input : 1037482 Mapped : 929752 (89.6% of input) of these: 114813 (12.3%) have multiple alignments (16235 have >20) Right reads: Input : 1037482 Mapped : 888674 (85.7% of input) of these: 111888 (12.6%) have multiple alignments (16235 have >20) 87.6% overall read mapping rate. Aligned pairs: 815231 of these: 103409 (12.7%) have multiple alignments 19255 ( 2.4%) are discordant alignments 76.7% concordant pair alignment rate.