Left reads: Input : 1497082 Mapped : 1347828 (90.0% of input) of these: 132615 ( 9.8%) have multiple alignments (15310 have >20) Right reads: Input : 1497082 Mapped : 1285968 (85.9% of input) of these: 128790 (10.0%) have multiple alignments (15308 have >20) 88.0% overall read mapping rate. Aligned pairs: 1185739 of these: 119994 (10.1%) have multiple alignments 22613 ( 1.9%) are discordant alignments 77.7% concordant pair alignment rate.