Left reads: Input : 1516374 Mapped : 1338271 (88.3% of input) of these: 206507 (15.4%) have multiple alignments (62981 have >20) Right reads: Input : 1516374 Mapped : 1327457 (87.5% of input) of these: 207615 (15.6%) have multiple alignments (63245 have >20) 87.9% overall read mapping rate. Aligned pairs: 1202802 of these: 186320 (15.5%) have multiple alignments 30918 ( 2.6%) are discordant alignments 77.3% concordant pair alignment rate.