Left reads: Input : 1131452 Mapped : 986967 (87.2% of input) of these: 166720 (16.9%) have multiple alignments (35214 have >20) Right reads: Input : 1131452 Mapped : 963355 (85.1% of input) of these: 164826 (17.1%) have multiple alignments (35122 have >20) 86.2% overall read mapping rate. Aligned pairs: 881546 of these: 151524 (17.2%) have multiple alignments 17119 ( 1.9%) are discordant alignments 76.4% concordant pair alignment rate.