Left reads: Input : 1085944 Mapped : 941908 (86.7% of input) of these: 32742 ( 3.5%) have multiple alignments (4367 have >20) Right reads: Input : 1085944 Mapped : 909912 (83.8% of input) of these: 31900 ( 3.5%) have multiple alignments (4367 have >20) 85.3% overall read mapping rate. Aligned pairs: 839241 of these: 29606 ( 3.5%) have multiple alignments 15342 ( 1.8%) are discordant alignments 75.9% concordant pair alignment rate.