Left reads: Input : 672352 Mapped : 545653 (81.2% of input) of these: 19060 ( 3.5%) have multiple alignments (1807 have >20) Right reads: Input : 672352 Mapped : 521141 (77.5% of input) of these: 18275 ( 3.5%) have multiple alignments (1807 have >20) 79.3% overall read mapping rate. Aligned pairs: 469983 of these: 16691 ( 3.6%) have multiple alignments 7476 ( 1.6%) are discordant alignments 68.8% concordant pair alignment rate.