Left reads: Input : 1504987 Mapped : 1366988 (90.8% of input) of these: 120193 ( 8.8%) have multiple alignments (9075 have >20) Right reads: Input : 1504987 Mapped : 1301213 (86.5% of input) of these: 116612 ( 9.0%) have multiple alignments (9075 have >20) 88.6% overall read mapping rate. Aligned pairs: 1210323 of these: 109930 ( 9.1%) have multiple alignments 21597 ( 1.8%) are discordant alignments 79.0% concordant pair alignment rate.